• 文章类型: Journal Article
    目的:探讨肾移植术后白内障患者的眼部特征及超声乳化联合人工晶状体(IOL)植入术的结果。
    方法:纳入肾移植术后白内障患者和接受超声乳化联合人工晶状体植入术的对照患者。所有患者均行超声乳化联合人工晶状体植入术。视敏度,眼内压,晶状体不透明度的类型,角膜内皮细胞密度,术前评估眼部生物学参数。视力预后,干眼症,超声乳化术后6个月监测术后并发症。
    结果:我们分析了16例肾移植术后患者的25只眼和21例对照患者的30只眼。肾移植组白内障最常见的类型为后囊膜下,对照组最常见的白内障类型为皮质性白内障。角膜散光的显著差异,白色与白色的比例,两组之间观察角膜曲率测量值。两组术后视力均有明显改善。术后并发症,例如前囊和后囊混浊的程度以及掺钕钇铝石榴石激光囊切开术的发生率,在肾移植组中显著降低。此外,肾移植组有2眼继发性青光眼。
    结论:这项研究表明,肾移植术后的白内障多为后囊下。大多数患者术后视力恢复良好,术后并发症发生率降低。提示超声乳化联合人工晶状体植入术安全有效,为肾移植术后多灶性人工晶状体植入术提供参考。
    OBJECTIVE: To explore ocular characteristics of patients with cataracts after renal transplantation and analyze the results of phacoemulsification combined with intraocular lens (IOL) implantation.
    METHODS: Patients with cataracts after renal transplantation and control patients who underwent phacoemulsification combined with IOL implantation were enrolled. All patients underwent phacoemulsification combined with IOL implantation. Visual acuity, intraocular pressure, type of lens opacity, corneal endothelial cell density, and ocular biological parameters were evaluated before surgery. Visual prognosis, dry eye, and postoperative complications were monitored for 6 months after phacoemulsification.
    RESULTS: We analyzed 25 eyes of 16 patients after renal transplantation and 30 eyes of 21 control patients. The most common type of cataract of renal transplantation group was posterior subcapsular, while the most common type of cataract of control group was cortical. Significant differences in corneal astigmatism, white-to-white ratio, and keratometry values were observed between the groups. The postoperative visual acuity of both groups significantly improved following surgery. Postoperative complications, such as the degree of anterior and posterior capsule opacification and the incidence of a requirement of neodymium-doped yttrium aluminum garnet laser capsulotomy, were significantly lower in the renal transplantation group. Moreover, secondary glaucoma occurred in two eyes in the renal transplantation group.
    CONCLUSIONS: This study showed that cataracts after renal transplantation were mostly posterior subcapsular. Postoperative visual acuity recovered well in most patients, with reduced incidence of postoperative complications. This study suggested that phacoemulsification combined with IOL implantation was safe and effective, providing a reference for multi-focal IOL implantation in kidney transplant recipients.
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  • 文章类型: Journal Article
    目前,关于SHD联合IBG和PVIBGT医治股骨头坏死(ONFH)的疗效差别,缺少相干研讨。首先,这项研究旨在比较手术髋关节脱位联合冲击骨移植(SHD-IBG)和带蒂血管化髂骨移植(PVIBGT)治疗ONFH的有效性。这项研究调查了两组患者髋关节保护失败的患者,以更好地理解失败的原因。选取2012年1月至2022年7月ARCO期IIIA期股骨头坏死患者30例(34髋)。根据手术方式不同分为A组(SHD-IBG)和B组(PVIBGT)。首先,比较SHD-IBG和PVIBGT术后1年的疗效;其次,评估SHD-IBG髋关节保留治疗的中长期疗效;最后,根据对保留髋关节衰竭患者股骨头摘除的研究,综合分析两组患者髋关节保存失败的原因。A组:11名男性(13髋),4名女性(4髋);B组:9名男性(11髋),6个女性(6个臀部)。首先,两组术后1年Harris评分的平均值:术前:70.7,术后1年:A组:78.9;术前:69.5,术后1年:B组:81.5,差异均有统计学意义(P<0.05)。与术前相比,DCE-MRI定量分析显示,术后1年,坏死区灌注增加,修复反应区灌注过度改善.其次,A组,随访2.5-11年(平均77个月),髋关节保存率为88.2%,最后一次随访时Harris的平均得分为73.2.术后DCE-MRI半定量分析显示坏死区和修复区的灌注曲线与正常区相似。这表明股骨头内的不稳定性得到了有效改善,灌注部分恢复。第三,根据Micro-CT和病理研究,这两组患者的髋关节保护失败,所有这些患者的股骨头明显塌陷和变形。它们的小梁很薄,部分杂乱无章,软骨下骨骨折,软骨与软骨下骨分离。坏死区的小梁稀疏,杂乱无章的安排,失去连续性,小梁陷阱中的细胞消失。坏死区域被纤维组织覆盖,修复区部分修复。力学有限元分析显示,在股骨的承重区域和周围皮质骨观察到最大等效应力。DCE-MRI显示修复反应区表现为异常高灌注。在这项研究中,术后1年比较SHD-IBG和PVIBGT的疗效,SHD-IBG的长期随访时间为2.5-11年(平均77个月),结合DCE-MRI结果,我们发现PVIBGT的短期效应比SHD-IBG更显著。SHD-IBG在中远期随访中可获得满意的髋关节保存效果。
    Currently, there is a lack of relevant research on the efficacy difference between SHD combined with IBG and PVIBGT in the treatment of osteonecrosis of the femoral head(ONFH). Firstly, this study intends to compare the effectiveness of surgical hip dislocation combined with impacting bone grafts (SHD-IBG) and pedicled vascularised iliac bone graft transfer (PVIBGT) in treating ONFH. And the study investigates patients who suffered from hip preservation failures from both groups to better comprehend failure reasons. 30 patients (34 hips) with ARCO stage IIIA femoral head necrosis were selected between January 2012 and July 2022. They were divided into group A(SHD-IBG) and group B (PVIBGT) according to different surgical methods. Firstly, compared the 1-year effect between SHD-IBG and PVIBGT at 1 year postoperatively; Secondly, assessed the medium and long-term efficacy of SHD-IBG hip preservation treatment; Lastly, based on study of the femoral head removed from patients with hip preservation failure in the two groups, the reasons for the failure of hip preservation were comprehensively analyzed in the two groups. Group A: 11 males (13 hips), 4 females (4 hips);Group B: 9 males (11 hips), 6 females (6 hips).Firstly, the average Harris scores of the two groups at 1 year after surgery: preoperative: 70.7, 1 year after surgery: 78.9 in group A; preoperative: 69.5, 1 year after surgery: 81.5 in group B. The differences were statistically significant (P < 0.05).Compared to the preoperative period, quantitative analysis by DCE-MRI showed an increase in perfusion in the necroticarea and an improvement in hyperperfusion in the repair-responsive area one year after the surgery. Secondly, in group A, the hip preservation rate was 88.2% at 2.5-11 (average of 77 months) years of follow-up, and the mean Harris score at the last follow-up was 73.2.Semi-quantitative analysis of postoperative DCE-MRI showed that the perfusion curves of necrotic and repaired areas were similar to those of the normal area. This suggests the instability within the femoral head had been effectively improved, and the perfusion had partially recovered. Thirdly, according to Micro-CT and pathologica studies of patients with hip preservation failure in these two groups, all these patients\' femoral head was significantly collapsed and deformed. Their trabeculae was thin and partially disorganized, with fractures in the subchondral bone and separation of the cartilage from the subchondral bone. The necrotic areas had sparse trabeculae, disorganized arrangement, loss of continuity, and disappearance of cells in the trabecular traps. The necrotic area was covered with fibrous tissue, and partial restoration was observed in the repair area. Mechanical finite element analysis showed that the maximum equivalent force was observed in the weight- bearing area and the cortical bone surrounding the shaft of femurand. The result of DCE-MRI showed that the repair reaction area exhibited abnormal hyperperfusion. In this study, the efficacy of SHD-IBG and PVIBGT was compared at 1 year after operation, and the long-term follow-up of SHD-IBG was 2.5-11 (mean 77 months) years, combined with DCE-MRI results, we found that the short-term effect of PVIBGT was more significant than that of SHD-IBG. SHD-IBG can achieve satisfactory hip preservation in the medium and long term follow-up.
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  • 文章类型: Journal Article
    背景:酪氨酸激酶抑制剂(TKIs)与肿瘤免疫微环境(TME)之间的动态相互作用在非小细胞肺癌(NSCLC)的治疗轨迹中起着至关重要的作用。了解TKIs的功能动力学和耐药机制对于推进NSCLC的治疗至关重要。
    方法:本研究评估了短期和长期TKI治疗对NSCLCTME的影响,特别针对表皮生长因子受体(EGFR)和间变性淋巴瘤激酶(ALK)突变。我们分析了免疫细胞组成的变化,细胞因子谱,和参与免疫逃避的关键蛋白质,如层粘连蛋白亚基γ-2(LAMC2)。我们还探讨了使用阿司匹林作为辅助疗法来调节TME和抵消TKI抵抗。
    结果:短期TKI治疗可增强T细胞介导的肿瘤清除,减少免疫抑制M2巨噬细胞浸润,和下调LAMC2表达。相反,长期TKI治疗促进了免疫抑制性TME,有助于耐药性和促进免疫逃逸。在各种致癌突变中观察到差异反应,与EGFR靶向治疗相比,ALK靶向治疗引发更强的抗肿瘤免疫反应。值得注意的是,我们发现阿司匹林有可能通过调节TME和增强T细胞介导的肿瘤清除来克服TKI耐药.
    结论:这些发现为TKI诱导的TME变化的动力学提供了新的见解,提高我们对NSCLC挑战的理解。该研究强调了TME在TKI耐药性中的关键作用,并表明辅助治疗,像阿司匹林,可能为增强TKI疗效和克服耐药性提供新的策略。
    BACKGROUND: The dynamic interplay between tyrosine kinase inhibitors (TKIs) and the tumor immune microenvironment (TME) plays a crucial role in the therapeutic trajectory of non-small cell lung cancer (NSCLC). Understanding the functional dynamics and resistance mechanisms of TKIs is essential for advancing the treatment of NSCLC.
    METHODS: This study assessed the effects of short-term and long-term TKI treatments on the TME in NSCLC, particularly targeting epidermal growth factor receptor (EGFR) and anaplastic lymphoma kinase (ALK) mutations. We analyzed changes in immune cell composition, cytokine profiles, and key proteins involved in immune evasion, such as laminin subunit γ-2 (LAMC2). We also explored the use of aspirin as an adjunct therapy to modulate the TME and counteract TKI resistance.
    RESULTS: Short-term TKI treatment enhanced T cell-mediated tumor clearance, reduced immunosuppressive M2 macrophage infiltration, and downregulated LAMC2 expression. Conversely, long-term TKI treatment fostered an immunosuppressive TME, contributing to drug resistance and promoting immune escape. Differential responses were observed among various oncogenic mutations, with ALK-targeted therapies eliciting a stronger antitumor immune response compared with EGFR-targeted therapies. Notably, we found that aspirin has potential in overcoming TKI resistance by modulating the TME and enhancing T cell-mediated tumor clearance.
    CONCLUSIONS: These findings offer new insights into the dynamics of TKI-induced changes in the TME, improving our understanding of NSCLC challenges. The study underscores the critical role of the TME in TKI resistance and suggests that adjunct therapies, like aspirin, may provide new strategies to enhance TKI efficacy and overcome resistance.
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  • 文章类型: Journal Article
    目的:在美国非肝细胞癌(HCC)患者的肝移植(LT)中,已经使用了候选人的连续风险分层和基于紧迫性的优先顺序。相反,对于HCC患者,仍然使用带有异常点的二分准则。这项研究评估了与LT相关的HCC(HALT-HCC)的危害的效用,肿瘤连续风险评分,对候补退出和LT后结果进行分层。
    方法:通过多种政策更改,使用UNOS数据库(2012-2021)开发并验证了竞争风险模型。主要结果是评估候补辍学和LT结局的辨别能力。该研究集中在HALT-HCC评分,与其他HCC风险评分相比。
    结果:在23,858名候选人中,14,646人(59.9%)接受了LT,5,196人(21.8%)退出了候补名单。较高的HALT-HCC评分与LT后退出发生率增加和预测的五年总生存率降低相关。HALT-HCC显示出最高的AUC值,用于预测上市后的各种间隔(6个月时为0.68,0.66atoneyear),具有出色的校准(六个月时R2=0.95,0.88atoneyear).在整个政策时期和局部治疗应用中,其准确性保持稳定。
    结论:这项研究强调了连续肿瘤风险评分的预测能力,以预测等待名单退出和肝移植后的结果在肝癌患者,独立于政策变化。该研究主张在肝脏分配决策中整合HALT-HCC等连续评分系统,平衡紧迫性,器官效用,和生存利益。
    OBJECTIVE: Continuous risk stratification of candidates and urgency-based prioritization have been utilized for liver transplantation (LT) in non-hepatocellular carcinoma (HCC) patients in the United States. Instead, for HCC patients, a dichotomous criterion with exception points is still used. This study evaluated the utility of the hazard associated with LT for HCC (HALT-HCC), an oncological continuous risk score, to stratify waitlist dropout and post-LT outcomes.
    METHODS: A competing risk model was developed and validated using the UNOS database (2012-2021) through multiple policy changes. The primary outcome was to assess the discrimination ability of waitlist dropouts and LT outcomes. The study focused on the HALT-HCC score, compared to other HCC risk scores.
    RESULTS: Among 23,858 candidates, 14,646 (59.9%) underwent LT and 5,196 (21.8%) dropped out of the waitlist. Higher HALT-HCC scores correlated with increased dropout incidence and lower predicted five-year overall survival after LT. HALT-HCC demonstrated the highest AUC values for predicting dropout at various intervals post-listing (0.68 at six months, 0.66 at one year), with excellent calibration (R2=0.95 at six months, 0.88 at one year). Its accuracy remained stable across policy periods and locoregional therapy applications.
    CONCLUSIONS: This study highlights the predictive capability of the continuous oncological risk score to forecast waitlist dropout and post-LT outcomes in HCC patients, independent of policy changes. The study advocates integrating continuous scoring systems like HALT-HCC in liver allocation decisions, balancing urgency, organ utility, and survival benefit.
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  • 文章类型: Journal Article
    背景:原发性移植物功能障碍(PGD)是心脏移植(HT)后第一年死亡的主要原因,但病理生理学和组织学尚未完全了解。这项研究描述并比较了患有和不患有PGD的患者心脏的形态学发现。
    方法:我们纳入了一个中心接受HT治疗的成年患者,这些患者在HT后的前14天内死亡,并接受尸检。回顾性记录临床和组织学资料。所有的心脏载玻片都由一个盲目的病理学家检查。我们将患者分为两组(PGD和非PGD),并比较他们之间的发现。
    结果:在322个HTs中,包括26例患者。中位年龄为51.5岁,57.7%为男性,46.1%患有非缺血性心肌病,30.8%查加斯心肌病和23%缺血性心肌病。11例患者出现PGD,而15名患者没有。PGD在72.7%的病例中为重度,在27.3%的病例中为中度。PGD组缺血时间较长(p=0.08),机械循环支持的发生率更高(p=0.004),较低的移植后双心室射血分数(p=0.005)。然而,两组的尸检结果相似.在所有病例中检测到80.7%的坏死(p=0.907比较组),在其中的46.1%中,取≥10%的心肌面积,在有和没有PGD的患者中发现了4种类型的坏死。
    结论:在移植后14天内死亡的伴或不伴PGD的HT患者中,心脏病理结果相似,并且在两组中坏死频繁。提出坏死不是PGD心功能不全的原因。
    BACKGROUND: Primary graft dysfunction (PGD) is the leading cause of death in the first year after heart transplant (HT), but pathophysiology and histology are not completely understood. This study describes and compares morphological findings of hearts of patients with and without PGD.
    METHODS: We included adult patients submitted to HT in a single center who died within the first 14 days after HT and were submitted to necropsy. Clinical and histological data were recorded retrospectively. All heart slides were reviewed by a blinded pathologist. We categorized patients in two groups (PGD and non-PGD) and compared findings between them.
    RESULTS: Among 322 HTs, 26 patients were included. Median age was 51.5 years, 57.7% were male, 46.1% had non-ischemic cardiomyopathy, 30.8% Chagas cardiomyopathy and 23% ischemic cardiomyopathy. Eleven patients presented PGD, while 15 patients did not. PGD was severe in 72.7% of cases and moderate in 27.3%. PGD group had longer ischemic time (p=0.08), higher incidence of mechanical circulatory support (p=0.004), lower post-transplant biventricular ejection fraction (p=0.005). However, necropsy findings were similar between groups. Necrosis was detected in 80.7% of all cases (p=0.907 comparing groups), taking ≥ 10% of myocardial area in 46.1% of them, and 4 types of necrosis were found either in patients with and without PGD.
    CONCLUSIONS: Cardiac pathological findings were similar in HT patients with or without PGD who died within 14 days after the transplant and necrosis was frequent in both groups, raising the hypothesis necrosis is not the cause of cardiac dysfunction in PGD.
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  • 文章类型: Journal Article
    背景:肺移植(LTx)术后急性肾损伤(AKI)是影响短期预后的重要因素。移植中心关注的重点是如何通过围手术期的优化管理来提高AKI的发生率。
    目的:本研究的目的是探讨围手术期容量对LTx术后早期AKI发生的影响。
    方法:该研究涉及2018年10月至2021年12月在北京中日友好医院接受LTx的患者。监测患者在LTx后72小时内发生的AKI,以及30天内的肾脏结局。比较和分析围手术期容量,以确定对各种临床结局的影响。
    结果:248名患者最终被纳入研究,其中近一半(49.6%)患有AKI。48.8%的AKI患者接受了连续性肾脏替代治疗(CRRT),到30天随访期结束时,57.7%的患者痊愈。围手术期容量与AKI发生率呈J型关系。此外,维持体液正平衡会增加30日死亡率,并导致肾脏结局不佳.
    结论:围手术期体积是LTx术后早期AKI的独立危险因素。积极的体液平衡会增加AKI的风险,30天死亡率,和不良的肾脏预后。LTx接受者可以受益于肺移植期间和之后的相对限制的流体策略。
    BACKGROUND: Postoperative acute kidney injury (AKI) after lung transplantation (LTx) is an important factor affecting the short-term outcomes. The focus item of transplantation centers is how to improve the incidence of AKI through optimal management during the perioperative period.
    OBJECTIVE: The purpose of the study is to investigate the influence of perioperative volume in the development of early AKI following LTx.
    METHODS: The study involved patients who had undergone LTx between October 2018 to December 2021 at China-Japan Friendship Hospital in Beijing. The patients were monitored for AKI occurring within 72 hours after LTx, as well as the renal outcomes within 30 days. The perioperative volumes were compared and analyzed to determine the impact on various clinical outcomes.
    RESULTS: 248 patients were enrolled in the study ultimately, with almost half of them (49.6 %) experiencing AKI. 48.8 % of AKI patients received continuous renal replacement therapy (CRRT), with 57.7 % recovered by the end of the 30-day follow-up period. A J-shaped relationship was demonstrated between perioperative volume and AKI incidence. Moreover, maintaining a positive fluid balance would increase the 30-day mortality and lead to poor renal outcomes.
    CONCLUSIONS: Perioperative volume is an independent risk factor of early AKI after LTx. Positive fluid balance increases the risk of AKI, 30-day mortality, and adverse renal prognosis. The LTx recipients may benefit from a relatively restrict fluid strategy during and after the lung transplantation.
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  • 文章类型: Journal Article
    他克莫司(TAC)在移植早期具有较高的药代动力学(PK)变异性。全血和细胞内TAC浓度与临床结果之间的关系仍然存在争议。这项研究确定了影响TACPK变异性的因素,并表征了全血和细胞内TAC浓度之间的关系。使用非线性混合效应模型分析了来自两个中心的215个肾移植受者(术后<90天)的1,787个样本的全血TAC浓度数据以及从先前研究数字化的细胞内TAC浓度(648个样本)。筛选潜在协变量的影响,并估计了全血与细胞内TAC浓度比(RWB:IC)的分布。最终的模型使用引导进行了评估,善良的适合,和预测校正的视觉预测检查。使用蒙特卡罗模拟确定每种类型的免疫细胞亚群的最佳给药方案和目标范围。两室模型充分描述了数据,估计平均TACCL/F为23.6L·h-1(相对标准误差:11.5%)。血细胞比容水平,CYP3A5*3载波状态,与五脂胶囊合用,逐渐减少的泼尼松龙剂量可能会导致移植后早期TACPK变异性的高度变异性。外周血单核细胞(PBMC)中所有TAC浓度的估计RWB:IC为4940,并且观察到PBMC的中心间变异性。PBMC中模拟的TAC目标范围为20.2-85.9pg·百万细胞-1。在进一步分析中应考虑细胞内浓度的中心间变异性。可以基于PK/PD变异性和模拟的细胞内浓度来指导TAC剂量调整。
    Tacrolimus (TAC) has high pharmacokinetic (PK) variability during the early transplantation period. The relationships between whole-blood and intracellular TAC concentrations and clinical outcomes remain controversial. This study identifies the factors affecting the PK variability of TAC and characterizes the relationships between whole-blood and intracellular TAC concentrations. Data regarding whole-blood TAC concentrations of 1,787 samples from 215 renal transplant recipients (<90 days postoperative) across two centers and intracellular TAC concentrations (648 samples) digitized from previous studies were analyzed using nonlinear mixed-effects modeling. The effects of potential covariates were screened, and the distribution of whole-blood to intracellular TAC concentration ratios (RWB:IC) was estimated. The final model was evaluated using bootstrap, goodness of fit, and prediction-corrected visual predictive checks. The optimal dosing regimens and target ranges for each type of immune cell subsets were determined using Monte Carlo simulations. A two-compartment model adequately described the data, and the estimated mean TAC CL/F was 23.6 L·h-1 (relative standard error: 11.5 %). The hematocrit level, CYP3A5*3 carrier status, co-administration with Wuzhi capsules, and tapering prednisolone dose may contribute to the high variability of TAC PK variability during the early post-transplant period. The estimated RWB:IC of all TAC concentrations in peripheral blood mononuclear cells (PBMCs) was 4940, and inter-center variability of PBMCs was observed. The simulated TAC target range in PBMCs was 20.2-85.9 pg·million cells-1. Inter-center variability in intracellular concentrations should be taken into account in further analyses. TAC dosage adjustments can be guided based on PK/PD variability and simulated intracellular concentrations.
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    文章类型: Case Reports
    Acetaminophen is a commonly used analgesic and antipyretic drug, which has experienced an increase in its consumption in recent years in our environment. There has also been an increase in the number of accidental and intentional overdoses that were treated by the health system. Its toxicity is dose-dependent and can cause fulminant liver failure, becoming one of the main reasons for liver transplantation in English-speaking countries. The case of a 28-year-old woman with a history of major depression and five previous suicide attempts, who deliberately ingested a significant amount of paracetamol tablets, is here presented. She developed fulminant liver failure and metabolic acidosis, for which she underwent an emergency liver transplant due to the severity of her condition, from which she evolved favorably. The decision to perform a liver transplant in serious cases like this and under a condition of severe psychiatric vulnerability is challenging and must be carefully considered. This particular case illustrates the importance of multidisciplinary care including psychiatric evaluation in patients with acetaminophen poisoning.
    El paracetamol es una droga analgésica y antipirética comúnmente utilizada, que ha experimentado un aumento en su consumo en los últimos años en nuestro medio. También se ha observado un incremento en el número de sobredosis accidentales e intencionales que fueron atendidas por el sistema de salud. Su toxicidad es dosis dependiente y puede causar falla hepática fulminante, convirtiéndose en una de las principales razones de trasplante hepático en países angloparlantes. Se presenta el caso de una mujer de 28 años con antecedentes de depresión mayor y cinco intentos de suicidio previos, quien ingirió deliberadamente una cantidad significativa de comprimidos de paracetamol. Desarrolló una falla hepática fulminante y acidosis metabólica, por lo que fue sometida a un trasplante hepático de emergencia debido a la gravedad de su condición evolucionando favorablemente. La decisión de realizar un trasplante hepático en casos graves como este y bajo una condición de vulnerabilidad psiquiátrica grave, es un desafío y debe considerarse cuidadosamente. Este caso en particular ilustra la importancia de la atención multidisciplinaria incluyendo la evaluación psiquiátrica en pacientes con intoxicación por paracetamol.
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  • 文章类型: Journal Article
    造血干细胞(HSCT)和器官移植的结果受到供体和受体HLA等位基因匹配的强烈影响。然而,捐赠者和有时接受者通常以低分辨率键入,一些等位基因缺失或模棱两可。因此,需要插补方法来检测最可能与分型一致的高分辨率HLA单倍型。这种插补算法需要预定义的单倍型频率。因此,输入和频率生成都需要分型的相位。我们开发了一种新的HLA单倍型和基因型归因方法,首先说明一个类型的所有候选阶段,然后解决每个阶段内的歧义。通过所有部分单倍型和与其一致的单倍型的图结构来解决这种歧义。此定相方法用于产生插补算法(GRIMM-图形插补和匹配)。然后将GRIMM与组合来自多个种族的信息以产生MR-GRIMM(多种族GRIMM)的可能性相结合。当家庭信息可用时,每个家庭成员的分阶段可以受到其他人的限制。我们建议GRAMM(Graph-bAsedfaMyyiMputation)对家族系HLA分型数据和脐带血单位对中的等位基因进行相位分析。最后,我们将MR-GRIMM与期望最大化(EM)算法相结合,以估计种族之间共享信息以产生MR-GRIMM(MR-GRIMMEM)的单倍型频率。我们已经证明,这些算法自然地结合了种族和家庭成员之间的信息。这些算法中的每一种算法的准确性都明显优于其当前的并行方法。MR-GRIMM导致匹配预测的高精度。GRAMM比MR-GRIMM或任何现有算法更好地推算家庭成员,并且实际上没有相位误差。MR-GRIMME获得比现有算法更高的可能性。GRIMM先生,GRIMME先生,和GRAMM可以作为服务器或通过GITHUB和PyPi中的独立版本提供,正如在适当的章节中详细说明的那样。
    The outcome of Hematopoietic Stem Cell (HSCT) and organ transplant is strongly affected by the matching of the HLA alleles of the donor and the recipient. However, donors and sometimes recipients are often typed at low resolution, with some alleles either missing or ambiguous. Thus, imputation methods are required to detect the most probably high-resolution HLA haplotypes consistent with a typing. Such imputation algorithms require predefined haplotype frequencies. As such, the phasing of the typing is required for both imputation and frequency generation.We have developed a new approach to HLA haplotype and genotype imputation, where first all candidate phases of a typing are explicated, and then the ambiguity within each phase is solved. This ambiguity is solved through a graph structure of all partial haplotypes and the haplotypes consistent with them.This phasing approach was used to produce an imputation algorithm (GRIMM-Graph Imputation and Matching). GRIMM was then combined with the possibility of combining information from multiple races to produce MR-GRIMM (Multi-Race GRIMM). When family information is available, the phasing of each family member can be restricted by the others. We propose GRAMM (GRaph-bAsed faMily iMputation) to phase alleles in family pedigree HLA typing data and in mother-cord blood unit pairs. Finally, we combined MR-GRIMM with an expectation-maximization (EM) algorithm to estimate haplotype frequencies sharing information between races to produce MR-GRIMME (MR-GRIMM EM).We have shown that these algorithms naturally combine information between races and family members. The accuracy of each of these algorithms is significantly better than its current parallel methods. MR-GRIMM leads to high accuracy in matching predictions. GRAMM better imputes family members than either MR-GRIMM or any existing algorithm and has practically no phasing errors. MR-GRIMME obtains a higher likelihood than existing algorithms.MR-GRIMM, MR-GRIMME, and GRAMM are available as servers or through stand-alone versions in GITHUB and PyPi, as detailed in the appropriate sections.
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  • 文章类型: Journal Article
    为了优化实体器官移植的结果,在供体和受体之间定期比较和匹配HLA基因。然而,在许多情况下,移植不能完全匹配,由于人群间的广泛变异和HLA等位基因的高多态性。移植组织中HLA分子的错配可以被受体的免疫细胞识别,导致免疫反应和可能的器官排斥反应。通过使用考虑错配HLA的免疫相关性的表位聚焦模型的分析,减少了这些不利结果。PIRCHE,预测间接可重新认知HLA表位的缩写,旨在通过预测HLA衍生的T细胞表位对患者-供体对中的HLA错配进行分类和定量。具体来说,该算法预测和计数可以由宿主HLA呈递的HLA衍生肽,称为间接呈递的T细胞表位。观察HLA中的免疫相关表位可以对免疫反应有更生物学相关的理解。与等位基因水平匹配相比,提供了更精细的匹配策略的扩展供体池。此PIRCHE算法可用于分析单次移植,以及用于人群研究的批量分析和用于比较器官可用性和风险状况的概率的统计分析。
    To optimize outcomes in solid organ transplantation, the HLA genes are regularly compared and matched between the donor and recipient. However, in many cases a transplant cannot be fully matched, due to widespread variation across populations and the hyperpolymorphism of HLA alleles. Mismatches of the HLA molecules in transplanted tissue can be recognized by immune cells of the recipient, leading to immune response and possibly organ rejection. These adverse outcomes are reduced by analysis using epitope-focused models that consider the immune relevance of the mismatched HLA.PIRCHE, an acronym for Predicted Indirectly ReCognizable HLA Epitopes, aims to categorize and quantify HLA mismatches in a patient-donor pair by predicting HLA-derived T cell epitopes. Specifically, the algorithm predicts and counts the HLA-derived peptides that can be presented by the host HLA, known as indirectly-presented T cell epitopes. Looking at the immune-relevant epitopes within HLA allows a more biologically relevant understanding of immune response, and provides an expanded donor pool for a more refined matching strategy compared with allele-level matching. This PIRCHE algorithm is available for analysis of single transplantations, as well as bulk analysis for population studies and statistical analysis for comparison of probability of organ availability and risk profiles.
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